diff --git a/docs/available_software/detail/AITW-olb_permeability.md b/docs/available_software/detail/AITW-olb_permeability.md new file mode 100644 index 0000000000..778603c052 --- /dev/null +++ b/docs/available_software/detail/AITW-olb_permeability.md @@ -0,0 +1,46 @@ +--- +json_ld: + '@context': https://schema.org + '@type': SoftwareApplication + applicationCategory: DeveloperApplication + description: 'AI-TranspWood - Calculates the permeability of wood microstructures + + and other porous materials using the Lattice Boltzmann Method (LBM). + + ' + license: Not confirmed + name: AITW-olb_permeability + offers: + '@type': Offer + price: 0 + operatingSystem: LINUX + review: + '@type': Review + author: + '@type': Organization + name: EESSI + reviewBody: Application has been successfully made available on all architectures + supported by EESSI + reviewRating: + '@type': Rating + ratingValue: 5 + softwareRequirements: See https://www.eessi.io/docs/ for how to make EESSI available + on your system + softwareVersion: '[''1.0.1'']' + url: https://www.ai-transpwood-project.eu/ +--- +# AITW-olb_permeability + + +AI-TranspWood - Calculates the permeability of wood microstructures +and other porous materials using the Lattice Boltzmann Method (LBM). + + +homepage: [https://www.ai-transpwood-project.eu/](https://www.ai-transpwood-project.eu/) + +## Available installations + + +|AITW-olb_permeability version|Supported CPU targets|Supported GPU targets|EESSI version|Module| +| --- | --- | --- | --- | --- | +|1.0.1|`generic`: `aarch64`, `x86_64`
Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`
AMD: `zen2`, `zen3`, `zen4`
Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`
|*(none)*|2023.06|`AITW-olb_permeability/1.0.1-foss-2023b`| \ No newline at end of file diff --git a/docs/available_software/detail/ANTLR.md b/docs/available_software/detail/ANTLR.md index 29faa3442e..e50f7ecdf7 100644 --- a/docs/available_software/detail/ANTLR.md +++ b/docs/available_software/detail/ANTLR.md @@ -43,4 +43,5 @@ ANTLR, ANother Tool for Language Recognition, (formerly PCCTS) |ANTLR version|Supported CPU targets|Supported GPU targets|EESSI version|Module| | --- | --- | --- | --- | --- | +|2.7.7|`generic`: `aarch64`, `x86_64`
Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`
AMD: `zen2`, `zen3`, `zen4`, `zen5`
Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`
|*(none)*|2025.06|`ANTLR/2.7.7-GCCcore-14.2.0`| |2.7.7|`generic`: `aarch64`, `x86_64`
Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`
AMD: `zen2`, `zen3`, `zen4`
Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`
|*(none)*|2023.06|`ANTLR/2.7.7-GCCcore-12.3.0-Java-11`| \ No newline at end of file diff --git a/docs/available_software/detail/Biopython.md b/docs/available_software/detail/Biopython.md index fb38d9138b..2f6e5774ed 100644 --- a/docs/available_software/detail/Biopython.md +++ b/docs/available_software/detail/Biopython.md @@ -25,7 +25,7 @@ json_ld: ratingValue: 5 softwareRequirements: See https://www.eessi.io/docs/ for how to make EESSI available on your system - softwareVersion: '[''1.85'', ''1.83'', ''1.81'']' + softwareVersion: '[''1.86'', ''1.85'', ''1.83'', ''1.81'']' url: https://www.biopython.org --- # Biopython @@ -44,6 +44,7 @@ Biopython is a set of freely available tools for biological |Biopython version|Supported CPU targets|Supported GPU targets|EESSI version|Module| | --- | --- | --- | --- | --- | +|1.86|`generic`: `aarch64`, `x86_64`
Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`
AMD: `zen2`, `zen3`, `zen4`, `zen5`
Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`
|*(none)*|2025.06|`Biopython/1.86-gfbf-2025b`| |1.85|`generic`: `aarch64`, `x86_64`
Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`
AMD: `zen2`, `zen3`, `zen4`, `zen5`
Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`
|*(none)*|2025.06|`Biopython/1.85-gfbf-2025a`| |1.83|`generic`: `aarch64`, `x86_64`
Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`
AMD: `zen2`, `zen3`, `zen4`
Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`
|*(none)*|2023.06|`Biopython/1.83-foss-2023a`| |1.81|`generic`: `aarch64`, `x86_64`
Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`
AMD: `zen2`, `zen3`, `zen4`
Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`
|*(none)*|2023.06|`Biopython/1.81-foss-2022b`| \ No newline at end of file diff --git a/docs/available_software/detail/Blosc.md b/docs/available_software/detail/Blosc.md index dfe81a0c4b..13d6859b35 100644 --- a/docs/available_software/detail/Blosc.md +++ b/docs/available_software/detail/Blosc.md @@ -22,7 +22,7 @@ json_ld: ratingValue: 5 softwareRequirements: See https://www.eessi.io/docs/ for how to make EESSI available on your system - softwareVersion: '[''1.21.5'']' + softwareVersion: '[''1.21.6'', ''1.21.5'']' url: https://www.blosc.org/ --- # Blosc @@ -37,4 +37,6 @@ Blosc, an extremely fast, multi-threaded, meta-compressor library |Blosc version|Supported CPU targets|Supported GPU targets|EESSI version|Module| | --- | --- | --- | --- | --- | +|1.21.6|`generic`: `aarch64`, `x86_64`
Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`
AMD: `zen2`, `zen3`, `zen4`, `zen5`
Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`
|*(none)*|2025.06|`Blosc/1.21.6-GCCcore-14.3.0`| +|1.21.6|`generic`: `aarch64`, `x86_64`
Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`
AMD: `zen2`, `zen3`, `zen4`, `zen5`
Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`
|*(none)*|2025.06|`Blosc/1.21.6-GCCcore-14.2.0`| |1.21.5|`generic`: `aarch64`, `x86_64`
Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`
AMD: `zen2`, `zen3`, `zen4`
Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`
|*(none)*|2023.06|`Blosc/1.21.5-GCCcore-13.2.0`| \ No newline at end of file diff --git a/docs/available_software/detail/FLINT.md b/docs/available_software/detail/FLINT.md new file mode 100644 index 0000000000..6624bcf0d5 --- /dev/null +++ b/docs/available_software/detail/FLINT.md @@ -0,0 +1,47 @@ +--- +json_ld: + '@context': https://schema.org + '@type': SoftwareApplication + applicationCategory: DeveloperApplication + description: "FLINT (Fast Library for Number Theory) is a C library in support of\ + \ computations\n in number theory. Operations that can be performed include conversions,\ + \ arithmetic, computing GCDs,\n factoring, solving linear systems, and evaluating\ + \ special functions. In addition, FLINT provides\n various low-level routines\ + \ for fast arithmetic. FLINT is extensively documented and tested." + license: Not confirmed + name: FLINT + offers: + '@type': Offer + price: 0 + operatingSystem: LINUX + review: + '@type': Review + author: + '@type': Organization + name: EESSI + reviewBody: Application has been successfully made available on all architectures + supported by EESSI + reviewRating: + '@type': Rating + ratingValue: 5 + softwareRequirements: See https://www.eessi.io/docs/ for how to make EESSI available + on your system + softwareVersion: '[''3.3.1'']' + url: https://www.flintlib.org/ +--- +# FLINT + + +FLINT (Fast Library for Number Theory) is a C library in support of computations + in number theory. Operations that can be performed include conversions, arithmetic, computing GCDs, + factoring, solving linear systems, and evaluating special functions. In addition, FLINT provides + various low-level routines for fast arithmetic. FLINT is extensively documented and tested. + +homepage: [https://www.flintlib.org/](https://www.flintlib.org/) + +## Available installations + + +|FLINT version|Supported CPU targets|Supported GPU targets|EESSI version|Module| +| --- | --- | --- | --- | --- | +|3.3.1|`generic`: `aarch64`, `x86_64`
Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`
AMD: `zen2`, `zen3`, `zen4`, `zen5`
Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`
|*(none)*|2025.06|`FLINT/3.3.1-gfbf-2025b`| \ No newline at end of file diff --git a/docs/available_software/detail/HOOMD-blue.md b/docs/available_software/detail/HOOMD-blue.md new file mode 100644 index 0000000000..eaf4186062 --- /dev/null +++ b/docs/available_software/detail/HOOMD-blue.md @@ -0,0 +1,52 @@ +--- +json_ld: + '@context': https://schema.org + '@type': SoftwareApplication + applicationCategory: DeveloperApplication + description: 'HOOMD-blue is a general-purpose particle simulation + + toolkit, implementing molecular dynamics and hard particle Monte Carlo + + optimized for fast execution on both GPUs and CPUs. + + This version contains the LLVM environment. + + ' + license: Not confirmed + name: HOOMD-blue + offers: + '@type': Offer + price: 0 + operatingSystem: LINUX + review: + '@type': Review + author: + '@type': Organization + name: EESSI + reviewBody: Application has been successfully made available on all architectures + supported by EESSI + reviewRating: + '@type': Rating + ratingValue: 5 + softwareRequirements: See https://www.eessi.io/docs/ for how to make EESSI available + on your system + softwareVersion: '[''7.0.1'']' + url: https://bitbucket.org/glotzer/hoomd-blue +--- +# HOOMD-blue + + +HOOMD-blue is a general-purpose particle simulation +toolkit, implementing molecular dynamics and hard particle Monte Carlo +optimized for fast execution on both GPUs and CPUs. +This version contains the LLVM environment. + + +homepage: [https://bitbucket.org/glotzer/hoomd-blue](https://bitbucket.org/glotzer/hoomd-blue) + +## Available installations + + +|HOOMD-blue version|Supported CPU targets|Supported GPU targets|EESSI version|Module| +| --- | --- | --- | --- | --- | +|7.0.1|`generic`: `aarch64`, `x86_64`
Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`
AMD: `zen2`, `zen3`, `zen4`, `zen5`
Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`
|*(none)*|2025.06|`HOOMD-blue/7.0.1-foss-2025b`| \ No newline at end of file diff --git a/docs/available_software/detail/JAGS.md b/docs/available_software/detail/JAGS.md new file mode 100644 index 0000000000..a9ffd4bb70 --- /dev/null +++ b/docs/available_software/detail/JAGS.md @@ -0,0 +1,43 @@ +--- +json_ld: + '@context': https://schema.org + '@type': SoftwareApplication + applicationCategory: DeveloperApplication + description: "JAGS is Just Another Gibbs Sampler. It is a program for analysis\n\ + \ of Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC) simulation\ + \ " + license: Not confirmed + name: JAGS + offers: + '@type': Offer + price: 0 + operatingSystem: LINUX + review: + '@type': Review + author: + '@type': Organization + name: EESSI + reviewBody: Application has been successfully made available on all architectures + supported by EESSI + reviewRating: + '@type': Rating + ratingValue: 5 + softwareRequirements: See https://www.eessi.io/docs/ for how to make EESSI available + on your system + softwareVersion: '[''4.3.2'']' + url: http://mcmc-jags.sourceforge.net/ +--- +# JAGS + + +JAGS is Just Another Gibbs Sampler. It is a program for analysis + of Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC) simulation + +homepage: [http://mcmc-jags.sourceforge.net/](http://mcmc-jags.sourceforge.net/) + +## Available installations + + +|JAGS version|Supported CPU targets|Supported GPU targets|EESSI version|Module| +| --- | --- | --- | --- | --- | +|4.3.2|`generic`: `aarch64`, `x86_64`
Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`
AMD: `zen2`, `zen3`, `zen4`, `zen5`
Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`
|*(none)*|2025.06|`JAGS/4.3.2-foss-2025b`| \ No newline at end of file diff --git a/docs/available_software/detail/JupyterLab.md b/docs/available_software/detail/JupyterLab.md index f1b7cd61c0..14b3714664 100644 --- a/docs/available_software/detail/JupyterLab.md +++ b/docs/available_software/detail/JupyterLab.md @@ -26,7 +26,7 @@ json_ld: ratingValue: 5 softwareRequirements: See https://www.eessi.io/docs/ for how to make EESSI available on your system - softwareVersion: '[''4.5.8'', ''4.4.9'', ''4.4.4'', ''4.2.5'', ''4.0.5'']' + softwareVersion: '[''4.5.8'', ''4.4.9'', ''4.4.4'', ''4.2.5'', ''4.2.0'', ''4.0.5'']' url: https://jupyter.org/ --- # JupyterLab @@ -48,6 +48,7 @@ JupyterLab is the next-generation user interface for Project Jupyter offering al |4.4.9|`generic`: `aarch64`, `x86_64`
Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`
AMD: `zen2`, `zen3`, `zen4`, `zen5`
Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`
|*(none)*|2025.06|`JupyterLab/4.4.9-GCCcore-14.3.0`| |4.4.4|`generic`: `aarch64`, `x86_64`
Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`
AMD: `zen2`, `zen3`, `zen4`, `zen5`
Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`
|*(none)*|2025.06|`JupyterLab/4.4.4-GCCcore-14.2.0`| |4.2.5|`generic`: `aarch64`, `x86_64`
Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`
AMD: `zen2`, `zen3`, `zen4`, `zen5`
Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`
|*(none)*|2025.06|`JupyterLab/4.2.5-GCCcore-13.3.0`| +|4.2.0|`generic`: `aarch64`, `x86_64`
Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`
AMD: `zen2`, `zen3`, `zen4`
Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`
|*(none)*|2023.06|`JupyterLab/4.2.0-GCCcore-13.2.0`| |4.0.5|`generic`: `aarch64`, `x86_64`
Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`
AMD: `zen2`, `zen3`, `zen4`
Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`
|*(none)*|2023.06|`JupyterLab/4.0.5-GCCcore-12.3.0`| ## Extensions @@ -60,7 +61,7 @@ Overview of extensions included in JupyterLab installations |`async-lru` version|JupyterLab modules that include it| | --- | --- | -|2.0.4|`JupyterLab/4.2.5-GCCcore-13.3.0`
`JupyterLab/4.0.5-GCCcore-12.3.0`| +|2.0.4|`JupyterLab/4.2.5-GCCcore-13.3.0`
`JupyterLab/4.2.0-GCCcore-13.2.0`
`JupyterLab/4.0.5-GCCcore-12.3.0`| ### async_lru @@ -76,7 +77,7 @@ Overview of extensions included in JupyterLab installations |`h11` version|JupyterLab modules that include it| | --- | --- | |0.16.0|`JupyterLab/4.4.9-GCCcore-14.3.0`
`JupyterLab/4.4.4-GCCcore-14.2.0`| -|0.14.0|`JupyterLab/4.2.5-GCCcore-13.3.0`| +|0.14.0|`JupyterLab/4.2.5-GCCcore-13.3.0`
`JupyterLab/4.2.0-GCCcore-13.2.0`| ### httpcore @@ -85,6 +86,7 @@ Overview of extensions included in JupyterLab installations | --- | --- | |1.0.9|`JupyterLab/4.4.9-GCCcore-14.3.0`
`JupyterLab/4.4.4-GCCcore-14.2.0`| |1.0.6|`JupyterLab/4.2.5-GCCcore-13.3.0`| +|1.0.5|`JupyterLab/4.2.0-GCCcore-13.2.0`| ### httpx @@ -93,6 +95,7 @@ Overview of extensions included in JupyterLab installations | --- | --- | |0.28.1|`JupyterLab/4.4.9-GCCcore-14.3.0`
`JupyterLab/4.4.4-GCCcore-14.2.0`| |0.27.2|`JupyterLab/4.2.5-GCCcore-13.3.0`| +|0.27.0|`JupyterLab/4.2.0-GCCcore-13.2.0`| ### json5 @@ -102,7 +105,7 @@ Overview of extensions included in JupyterLab installations |0.14.0|`JupyterLab/4.5.8-GCCcore-15.2.0`| |0.12.1|`JupyterLab/4.4.9-GCCcore-14.3.0`| |0.12.0|`JupyterLab/4.4.4-GCCcore-14.2.0`| -|0.9.25|`JupyterLab/4.2.5-GCCcore-13.3.0`| +|0.9.25|`JupyterLab/4.2.5-GCCcore-13.3.0`
`JupyterLab/4.2.0-GCCcore-13.2.0`| |0.9.14|`JupyterLab/4.0.5-GCCcore-12.3.0`| ### jupyter-lsp @@ -110,7 +113,7 @@ Overview of extensions included in JupyterLab installations |`jupyter-lsp` version|JupyterLab modules that include it| | --- | --- | -|2.2.5|`JupyterLab/4.4.4-GCCcore-14.2.0`
`JupyterLab/4.2.5-GCCcore-13.3.0`| +|2.2.5|`JupyterLab/4.4.4-GCCcore-14.2.0`
`JupyterLab/4.2.5-GCCcore-13.3.0`
`JupyterLab/4.2.0-GCCcore-13.2.0`| |2.2.0|`JupyterLab/4.0.5-GCCcore-12.3.0`| ### jupyter_lsp @@ -130,6 +133,7 @@ Overview of extensions included in JupyterLab installations |4.4.9|`JupyterLab/4.4.9-GCCcore-14.3.0`| |4.4.4|`JupyterLab/4.4.4-GCCcore-14.2.0`| |4.2.5|`JupyterLab/4.2.5-GCCcore-13.3.0`| +|4.2.0|`JupyterLab/4.2.0-GCCcore-13.2.0`| |4.0.5|`JupyterLab/4.0.5-GCCcore-12.3.0`| ### jupyterlab-server @@ -145,4 +149,5 @@ Overview of extensions included in JupyterLab installations |`jupyterlab_server` version|JupyterLab modules that include it| | --- | --- | |2.27.3|`JupyterLab/4.4.9-GCCcore-14.3.0`
`JupyterLab/4.4.4-GCCcore-14.2.0`
`JupyterLab/4.2.5-GCCcore-13.3.0`| +|2.27.1|`JupyterLab/4.2.0-GCCcore-13.2.0`| |2.24.0|`JupyterLab/4.0.5-GCCcore-12.3.0`| \ No newline at end of file diff --git a/docs/available_software/detail/JupyterNotebook.md b/docs/available_software/detail/JupyterNotebook.md index e33b09adb4..753db64f05 100644 --- a/docs/available_software/detail/JupyterNotebook.md +++ b/docs/available_software/detail/JupyterNotebook.md @@ -24,7 +24,7 @@ json_ld: ratingValue: 5 softwareRequirements: See https://www.eessi.io/docs/ for how to make EESSI available on your system - softwareVersion: '[''7.4.7'', ''7.4.4'', ''7.2.3'', ''7.0.2'']' + softwareVersion: '[''7.4.7'', ''7.4.4'', ''7.2.3'', ''7.2.0'', ''7.0.2'']' url: https://jupyter.org/ --- # JupyterNotebook @@ -43,6 +43,7 @@ The Jupyter Notebook is the original web application for creating and |7.4.7|`generic`: `aarch64`, `x86_64`
Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`
AMD: `zen2`, `zen3`, `zen4`, `zen5`
Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`
|*(none)*|2025.06|`JupyterNotebook/7.4.7-GCCcore-14.3.0`| |7.4.4|`generic`: `aarch64`, `x86_64`
Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`
AMD: `zen2`, `zen3`, `zen4`, `zen5`
Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`
|*(none)*|2025.06|`JupyterNotebook/7.4.4-GCCcore-14.2.0`| |7.2.3|`generic`: `aarch64`, `x86_64`
Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`
AMD: `zen2`, `zen3`, `zen4`, `zen5`
Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`
|*(none)*|2025.06|`JupyterNotebook/7.2.3-GCCcore-13.3.0`| +|7.2.0|`generic`: `aarch64`, `x86_64`
Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`
AMD: `zen2`, `zen3`, `zen4`
Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`
|*(none)*|2023.06|`JupyterNotebook/7.2.0-GCCcore-13.2.0`| |7.0.2|`generic`: `aarch64`, `x86_64`
Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`
AMD: `zen2`, `zen3`, `zen4`
Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`
|*(none)*|2023.06|`JupyterNotebook/7.0.2-GCCcore-12.3.0`| ## Extensions diff --git a/docs/available_software/detail/MERINGUE.md b/docs/available_software/detail/MERINGUE.md new file mode 100644 index 0000000000..f2e880d7fc --- /dev/null +++ b/docs/available_software/detail/MERINGUE.md @@ -0,0 +1,49 @@ +--- +json_ld: + '@context': https://schema.org + '@type': SoftwareApplication + applicationCategory: DeveloperApplication + description: ' + + R package to characterizing spatial gene expression heterogeneity in + + spatially resolved single-cell transcriptomics data with nonuniform cellular densities. + + ' + license: Not confirmed + name: MERINGUE + offers: + '@type': Offer + price: 0 + operatingSystem: LINUX + review: + '@type': Review + author: + '@type': Organization + name: EESSI + reviewBody: Application has been successfully made available on all architectures + supported by EESSI + reviewRating: + '@type': Rating + ratingValue: 5 + softwareRequirements: See https://www.eessi.io/docs/ for how to make EESSI available + on your system + softwareVersion: '[''1.0-2022-06-07'']' + url: https://github.com/JEFworks-Lab/MERINGUE +--- +# MERINGUE + + + +R package to characterizing spatial gene expression heterogeneity in +spatially resolved single-cell transcriptomics data with nonuniform cellular densities. + + +homepage: [https://github.com/JEFworks-Lab/MERINGUE](https://github.com/JEFworks-Lab/MERINGUE) + +## Available installations + + +|MERINGUE version|Supported CPU targets|Supported GPU targets|EESSI version|Module| +| --- | --- | --- | --- | --- | +|1.0-2022-06-07|`generic`: `aarch64`, `x86_64`
Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`
AMD: `zen2`, `zen3`, `zen4`, `zen5`
Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`
|*(none)*|2025.06|`MERINGUE/1.0-2022-06-07-foss-2025a-R-4.5.1`| \ No newline at end of file diff --git a/docs/available_software/detail/MoviePy.md b/docs/available_software/detail/MoviePy.md new file mode 100644 index 0000000000..149a4b4d8b --- /dev/null +++ b/docs/available_software/detail/MoviePy.md @@ -0,0 +1,76 @@ +--- +json_ld: + '@context': https://schema.org + '@type': SoftwareApplication + applicationCategory: DeveloperApplication + description: "MoviePy (full documentation) is a Python library for video editing:\ + \ cutting, concatenations,\n title insertions, video compositing (a.k.a. non-linear\ + \ editing), video processing, and creation of custom effects." + license: Not confirmed + name: MoviePy + offers: + '@type': Offer + price: 0 + operatingSystem: LINUX + review: + '@type': Review + author: + '@type': Organization + name: EESSI + reviewBody: Application has been successfully made available on all architectures + supported by EESSI + reviewRating: + '@type': Rating + ratingValue: 5 + softwareRequirements: See https://www.eessi.io/docs/ for how to make EESSI available + on your system + softwareVersion: '[''2.2.1'']' + url: https://zulko.github.io/moviepy/ +--- +# MoviePy + + +MoviePy (full documentation) is a Python library for video editing: cutting, concatenations, + title insertions, video compositing (a.k.a. non-linear editing), video processing, and creation of custom effects. + +homepage: [https://zulko.github.io/moviepy/](https://zulko.github.io/moviepy/) + +## Available installations + + +|MoviePy version|Supported CPU targets|Supported GPU targets|EESSI version|Module| +| --- | --- | --- | --- | --- | +|2.2.1|`generic`: `aarch64`, `x86_64`
Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`
AMD: `zen2`, `zen3`, `zen4`, `zen5`
Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`
|*(none)*|2025.06|`MoviePy/2.2.1-foss-2025a`| + +## Extensions + +Overview of extensions included in MoviePy installations + + +### imageio_ffmpeg + + +|`imageio_ffmpeg` version|MoviePy modules that include it| +| --- | --- | +|0.6.0|`MoviePy/2.2.1-foss-2025a`| + +### moviepy + + +|`moviepy` version|MoviePy modules that include it| +| --- | --- | +|2.2.1|`MoviePy/2.2.1-foss-2025a`| + +### proglog + + +|`proglog` version|MoviePy modules that include it| +| --- | --- | +|0.1.12|`MoviePy/2.2.1-foss-2025a`| + +### python_dotenv + + +|`python_dotenv` version|MoviePy modules that include it| +| --- | --- | +|1.2.1|`MoviePy/2.2.1-foss-2025a`| \ No newline at end of file diff --git a/docs/available_software/detail/OrthoFinder.md b/docs/available_software/detail/OrthoFinder.md index 42e5340858..38886a2f46 100644 --- a/docs/available_software/detail/OrthoFinder.md +++ b/docs/available_software/detail/OrthoFinder.md @@ -38,4 +38,5 @@ OrthoFinder is a fast, accurate and comprehensive platform for comparative genom |OrthoFinder version|Supported CPU targets|Supported GPU targets|EESSI version|Module| | --- | --- | --- | --- | --- | +|2.5.5|`generic`: `aarch64`, `x86_64`
Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`
AMD: `zen2`, `zen3`, `zen4`, `zen5`
Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`
|*(none)*|2025.06|`OrthoFinder/2.5.5-foss-2025a`| |2.5.5|`generic`: `aarch64`, `x86_64`
Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`
AMD: `zen2`, `zen3`, `zen4`
Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`
|*(none)*|2023.06|`OrthoFinder/2.5.5-foss-2023a`| \ No newline at end of file diff --git a/docs/available_software/detail/Rtree.md b/docs/available_software/detail/Rtree.md new file mode 100644 index 0000000000..720c1aa74c --- /dev/null +++ b/docs/available_software/detail/Rtree.md @@ -0,0 +1,55 @@ +--- +json_ld: + '@context': https://schema.org + '@type': SoftwareApplication + applicationCategory: DeveloperApplication + description: "Rtree is a ctypes Python wrapper of libspatialindex that provides\ + \ a number of advanced spatial\n indexing features for the spatially curious Python\ + \ user." + license: Not confirmed + name: Rtree + offers: + '@type': Offer + price: 0 + operatingSystem: LINUX + review: + '@type': Review + author: + '@type': Organization + name: EESSI + reviewBody: Application has been successfully made available on all architectures + supported by EESSI + reviewRating: + '@type': Rating + ratingValue: 5 + softwareRequirements: See https://www.eessi.io/docs/ for how to make EESSI available + on your system + softwareVersion: '[''1.4.1'']' + url: https://toblerity.org/rtree/ +--- +# Rtree + + +Rtree is a ctypes Python wrapper of libspatialindex that provides a number of advanced spatial + indexing features for the spatially curious Python user. + +homepage: [https://toblerity.org/rtree/](https://toblerity.org/rtree/) + +## Available installations + + +|Rtree version|Supported CPU targets|Supported GPU targets|EESSI version|Module| +| --- | --- | --- | --- | --- | +|1.4.1|`generic`: `aarch64`, `x86_64`
Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`
AMD: `zen2`, `zen3`, `zen4`, `zen5`
Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`
|*(none)*|2025.06|`Rtree/1.4.1-GCCcore-14.3.0`| + +## Extensions + +Overview of extensions included in Rtree installations + + +### Rtree + + +|`Rtree` version|Rtree modules that include it| +| --- | --- | +|1.4.1|`Rtree/1.4.1-GCCcore-14.3.0`| \ No newline at end of file diff --git a/docs/available_software/detail/Seaborn.md b/docs/available_software/detail/Seaborn.md index 4d173653ea..f96754e858 100644 --- a/docs/available_software/detail/Seaborn.md +++ b/docs/available_software/detail/Seaborn.md @@ -39,4 +39,6 @@ json_ld: |Seaborn version|Supported CPU targets|Supported GPU targets|EESSI version|Module| | --- | --- | --- | --- | --- | +|0.13.2|`generic`: `aarch64`, `x86_64`
Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`
AMD: `zen2`, `zen3`, `zen4`, `zen5`
Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`
|*(none)*|2025.06|`Seaborn/0.13.2-gfbf-2025b`| +|0.13.2|`generic`: `aarch64`, `x86_64`
Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`
AMD: `zen2`, `zen3`, `zen4`, `zen5`
Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`
|*(none)*|2025.06|`Seaborn/0.13.2-gfbf-2025a`| |0.13.2|`generic`: `aarch64`, `x86_64`
Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`
AMD: `zen2`, `zen3`, `zen4`
Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`
|*(none)*|2023.06|`Seaborn/0.13.2-gfbf-2023a`| \ No newline at end of file diff --git a/docs/available_software/detail/libdap.md b/docs/available_software/detail/libdap.md index fa15ff5e31..535059a9c0 100644 --- a/docs/available_software/detail/libdap.md +++ b/docs/available_software/detail/libdap.md @@ -23,7 +23,7 @@ json_ld: ratingValue: 5 softwareRequirements: See https://www.eessi.io/docs/ for how to make EESSI available on your system - softwareVersion: '[''3.20.11'']' + softwareVersion: '[''3.21.1'', ''3.20.11'']' url: https://www.opendap.org/software/libdap --- # libdap @@ -39,4 +39,5 @@ A C++ SDK which contains an implementation of DAP 2.0 and |libdap version|Supported CPU targets|Supported GPU targets|EESSI version|Module| | --- | --- | --- | --- | --- | +|3.21.1|`generic`: `aarch64`, `x86_64`
Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`
AMD: `zen2`, `zen3`, `zen4`, `zen5`
Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`
|*(none)*|2025.06|`libdap/3.21.1-GCCcore-14.2.0`| |3.20.11|`generic`: `aarch64`, `x86_64`
Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`
AMD: `zen2`, `zen3`, `zen4`
Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`
|*(none)*|2023.06|`libdap/3.20.11-GCCcore-12.3.0`| \ No newline at end of file diff --git a/docs/available_software/detail/mrcfile.md b/docs/available_software/detail/mrcfile.md new file mode 100644 index 0000000000..d9ef9f6205 --- /dev/null +++ b/docs/available_software/detail/mrcfile.md @@ -0,0 +1,59 @@ +--- +json_ld: + '@context': https://schema.org + '@type': SoftwareApplication + applicationCategory: DeveloperApplication + description: "mrcfile is a Python implementation of the MRC2014 file format, which\ + \ is used in\nstructural biology to store image and volume data.\n\nIt allows\ + \ MRC files to be created and opened easily using a very simple API,\nwhich exposes\ + \ the file\u2019s header and data as numpy arrays. The code runs in\nPython 2\ + \ and 3 and is fully unit-tested.\n\nThis library aims to allow users and developers\ + \ to read and write standard-\ncompliant MRC files in Python as easily as possible,\ + \ and with no dependencies on\nany compiled libraries except numpy. You can use\ + \ it interactively to inspect\nfiles, correct headers and so on, or in scripts\ + \ and larger software packages to\nprovide basic MRC file I/O functions. " + license: Not confirmed + name: mrcfile + offers: + '@type': Offer + price: 0 + operatingSystem: LINUX + review: + '@type': Review + author: + '@type': Organization + name: EESSI + reviewBody: Application has been successfully made available on all architectures + supported by EESSI + reviewRating: + '@type': Rating + ratingValue: 5 + softwareRequirements: See https://www.eessi.io/docs/ for how to make EESSI available + on your system + softwareVersion: '[''1.5.4'']' + url: https://github.com/ccpem/mrcfile +--- +# mrcfile + + +mrcfile is a Python implementation of the MRC2014 file format, which is used in +structural biology to store image and volume data. + +It allows MRC files to be created and opened easily using a very simple API, +which exposes the file’s header and data as numpy arrays. The code runs in +Python 2 and 3 and is fully unit-tested. + +This library aims to allow users and developers to read and write standard- +compliant MRC files in Python as easily as possible, and with no dependencies on +any compiled libraries except numpy. You can use it interactively to inspect +files, correct headers and so on, or in scripts and larger software packages to +provide basic MRC file I/O functions. + +homepage: [https://github.com/ccpem/mrcfile](https://github.com/ccpem/mrcfile) + +## Available installations + + +|mrcfile version|Supported CPU targets|Supported GPU targets|EESSI version|Module| +| --- | --- | --- | --- | --- | +|1.5.4|`generic`: `aarch64`, `x86_64`
Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`
AMD: `zen2`, `zen3`, `zen4`, `zen5`
Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`
|*(none)*|2025.06|`mrcfile/1.5.4-gfbf-2025a`| \ No newline at end of file diff --git a/docs/available_software/detail/nanobind.md b/docs/available_software/detail/nanobind.md index f69d0979bd..3fb174e945 100644 --- a/docs/available_software/detail/nanobind.md +++ b/docs/available_software/detail/nanobind.md @@ -25,7 +25,7 @@ json_ld: ratingValue: 5 softwareRequirements: See https://www.eessi.io/docs/ for how to make EESSI available on your system - softwareVersion: '[''2.5.0'']' + softwareVersion: '[''2.9.2'', ''2.5.0'']' url: https://github.com/wjakob/nanobind --- # nanobind @@ -41,4 +41,5 @@ builds on capabilities introduced in recent versions of C++. |nanobind version|Supported CPU targets|Supported GPU targets|EESSI version|Module| | --- | --- | --- | --- | --- | +|2.9.2|`generic`: `aarch64`, `x86_64`
Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`
AMD: `zen2`, `zen3`, `zen4`, `zen5`
Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`
|*(none)*|2025.06|`nanobind/2.9.2-GCCcore-14.3.0`| |2.5.0|`generic`: `aarch64`, `x86_64`
Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`
AMD: `zen2`, `zen3`, `zen4`
Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`
|*(none)*|2023.06|`nanobind/2.5.0-GCCcore-13.2.0`| \ No newline at end of file diff --git a/docs/available_software/detail/py-cpuinfo.md b/docs/available_software/detail/py-cpuinfo.md index beb59dafda..2d962b992d 100644 --- a/docs/available_software/detail/py-cpuinfo.md +++ b/docs/available_software/detail/py-cpuinfo.md @@ -37,4 +37,5 @@ py-cpuinfo gets CPU info with pure Python. |py-cpuinfo version|Supported CPU targets|Supported GPU targets|EESSI version|Module| | --- | --- | --- | --- | --- | +|9.0.0|`generic`: `aarch64`, `x86_64`
Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`
AMD: `zen2`, `zen3`, `zen4`, `zen5`
Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`
|*(none)*|2025.06|`py-cpuinfo/9.0.0-GCCcore-14.2.0`| |9.0.0|`generic`: `aarch64`, `x86_64`
Arm: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`
AMD: `zen2`, `zen3`, `zen4`
Intel: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`
|*(none)*|2023.06|`py-cpuinfo/9.0.0-GCCcore-13.2.0`| \ No newline at end of file diff --git a/mkdocs.yml b/mkdocs.yml index cd39f50610..c80f5eac6f 100644 --- a/mkdocs.yml +++ b/mkdocs.yml @@ -214,7 +214,7 @@ extra: - icon: fontawesome/brands/twitter link: https://twitter.com/eessi_hpc # this gets auto-updated via update_generated_time.sh script run in update_available_software.yml action - generated_time: "Sat, 26 Sep 2026 at 16:04:28 UTC" + generated_time: "Sun, 27 Sep 2026 at 16:41:01 UTC" slack_invite_url: "https://join.slack.com/t/eessi-hpc/shared_invite/zt-2wg10p26d-m_CnRB89xQq3zk9qxf1k3g" extra_javascript: # mermaid diagram