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@LangeLab

Lange Lab

Proteomics Lab at BC Children's Hospital Research Institude

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  1. SQuAPP SQuAPP Public

    Shiny App allows streamlined analysis of multiple levels of proteomics data.

    R 10 3

  2. RoLiM RoLiM Public

    Detection of statistically enriched patterns in sequence data sets.

    Python 4

  3. ProteoForge_Analysis ProteoForge_Analysis Public

    All the scripts and notebooks used to produce the data written in the manuscript titled "ProteoForge: An Imputation-Aware Framework for Differential Proteoform Discovery in Bottom-Up Proteomics".

    Jupyter Notebook 4 2

  4. pepVet pepVet Public

    pepVet is an R package for proteolytic digest simulation, peptide-set scoring, enzyme comparison, and workflow preset selection for bottom-up proteomics.

    R 3

  5. pxseek pxseek Public

    Automated web scraper to collect and filter pediatric cancer datasets from ProteomeXchange.

    Python 2

  6. Library-Filtering Library-Filtering Public

    Script to filter spectral libraries from Spectronaut or DiaNN for peptides with fragments that support biotin modification at the peptide N terminus.

    Python 2

Repositories

Showing 10 of 13 repositories
  • HarmonizePy Public

    Pure-Python batch-effect harmonization toolkit validated, ported from HarmonizR

    LangeLab/HarmonizePy's past year of commit activity
    Python 1 0 0 2 Updated Sep 28, 2026
  • FusionPep Public

    Peptide mapping and junction review for fusion proteins.

    LangeLab/FusionPep's past year of commit activity
    R 0 MIT 0 0 0 Updated Sep 26, 2026
  • PXAudit Public

    Audit PRIDE proteomics study metadata from the command line. Scores each dataset on a 7-tier FAIR ladder and a quantification-readiness axis. Results land in a local SQLite database.

    LangeLab/PXAudit's past year of commit activity
    Python 1 MIT 0 0 0 Updated Aug 31, 2026
  • pepVet Public

    pepVet is an R package for proteolytic digest simulation, peptide-set scoring, enzyme comparison, and workflow preset selection for bottom-up proteomics.

    LangeLab/pepVet's past year of commit activity
    R 3 0 0 0 Updated Jul 30, 2026
  • Proteomics-Congruency-Study Public
    LangeLab/Proteomics-Congruency-Study's past year of commit activity
    R 1 0 0 0 Updated Jul 11, 2026
  • ProteoForge_Analysis Public

    All the scripts and notebooks used to produce the data written in the manuscript titled "ProteoForge: An Imputation-Aware Framework for Differential Proteoform Discovery in Bottom-Up Proteomics".

    LangeLab/ProteoForge_Analysis's past year of commit activity
    Jupyter Notebook 4 2 0 0 Updated Jul 8, 2026
  • pxseek Public

    Automated web scraper to collect and filter pediatric cancer datasets from ProteomeXchange.

    LangeLab/pxseek's past year of commit activity
    Python 2 MIT 0 0 0 Updated May 25, 2026
  • Analysis_of_QuEStVar_Manuscript Public

    Analysis snapshot of the "Statistical testing for protein equivalence identifies core functional modules conserved across 360 cancer cell lines and presents a general approach to investigating biological systems".

    LangeLab/Analysis_of_QuEStVar_Manuscript's past year of commit activity
    Jupyter Notebook 2 MIT 2 0 0 Updated May 24, 2026
  • RoLiM_Standalone Public
    LangeLab/RoLiM_Standalone's past year of commit activity
    Python 2 0 3 0 Updated Mar 22, 2026
  • RoLiM Public

    Detection of statistically enriched patterns in sequence data sets.

    LangeLab/RoLiM's past year of commit activity
    Python 4 0 2 27 Updated Dec 23, 2024
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