Issues

• Motifs not present

  aertslab/create_cisTarget_databases#59 · Filter by author francicco opened on Oct 21, 2025
  1

• Error: No motifs provided

  aertslab/create_cisTarget_databases#58 · Filter by author letaibui27-star opened on Oct 7, 2025
  5

• v10 motifs in motif collection vs feather file

  aertslab/create_cisTarget_databases#57 · Filter by author Fiona713 opened on Jul 7, 2025
  1

• How to incorporate personal ChIP-Seq Data Into Pyscenic?

  aertslab/create_cisTarget_databases#56 · Filter by author rayajallad opened on May 28, 2025

• Cluser buster bug

  aertslab/create_cisTarget_databases#55 · Filter by author sarah-chapin opened on Feb 18, 2025
  1

• create_cistarget_motif_databases

  aertslab/create_cisTarget_databases#54 · Filter by author gilgolan73 opened on Dec 2, 2024
  22

• Database creation for Killifish

  aertslab/create_cisTarget_databases#53 · Filter by author juhi-ku opened on Sep 11, 2024
  10

• > @mtxellrb A script for creating a track database from bigWig TF ChIP-seq data is now added :create_cistarget_track_databases.py

  aertslab/create_cisTarget_databases#52 · Filter by author MatthewTCManion opened on Aug 30, 2024
  14

• The public motif collection PWMs for motifs-v9-nr

  aertslab/create_cisTarget_databases#51 · Filter by author QianzhaoJ opened on Aug 5, 2024
  1

• Try to create the chicken cisdatabase

  aertslab/create_cisTarget_databases#50 · Filter by author LJZYaaa opened on Jun 26, 2024
  8

• The 'zsync' files of databases file might be incorrect.

  aertslab/create_cisTarget_databases#49 · Filter by author NirvanaCh7 opened on May 9, 2024
  5

• PWMs in motif collection.

  aertslab/create_cisTarget_databases#47 · Filter by author FelixWaern opened on Apr 23, 2024
  1

• how to get the 'genes_vs_motifs.rankings.feather'

  aertslab/create_cisTarget_databases#45 · Filter by author krayon4river opened on Dec 6, 2023
  3

• Creating a cisTarget database for Plant

  aertslab/create_cisTarget_databases#44 · Filter by author wujiayi666-star opened on Sep 28, 2023
  1

• convert SCENIC+ public motif collection to HOMER format

  aertslab/create_cisTarget_databases#42 · Filter by author pchiang5 opened on Aug 14, 2023
  1

• FASTA Input to Generate SCENIC+ Databases for Rat

  aertslab/create_cisTarget_databases#41 · Filter by author jonhsussman opened on Aug 13, 2023
  2

• build mm10 regions based databases

  aertslab/create_cisTarget_databases#40 · Filter by author WGLUN opened on Aug 8, 2023
  4

• Creating a cisTarget database for Zebrafish

  aertslab/create_cisTarget_databases#39 · Filter by author RcuIT opened on Jul 11, 2023
  6

• Problems encountered during the construction of the Red Eared Turtle database

  aertslab/create_cisTarget_databases#38 · Filter by author zhongguodiyidao opened on May 14, 2023
  4

• motif2TF

  aertslab/create_cisTarget_databases#37 · Filter by author Lidw2020 opened on Feb 21, 2023
  6

• @honghh2018 You can use the mouse or human motif table and replace the gene_name column with the homologous gene for rat.

  aertslab/create_cisTarget_databases#36 · Filter by author Lidw2020 opened on Feb 21, 2023

• What is the correct workflow for creating tracks DBs?

  aertslab/create_cisTarget_databases#35 · Filter by author eboileau opened on Feb 2, 2023
  7

• How can I use the "genes_vs_motifs.feather" into R SCENIC

  aertslab/create_cisTarget_databases#30 · Filter by author CNChunhua opened on Oct 19, 2022

• Will zebrafish cisTarget databases be available in the future?

  aertslab/create_cisTarget_databases#26 · Filter by author yjchen1201 opened on Sep 19, 2022
  9

• How to deal with genes or regions in human unmapped in other species by liftover

  aertslab/create_cisTarget_databases#25 · Filter by author yangliu0729 opened on Aug 28, 2022
  1