Skip to content

Enable filtering cells touching borders #138

Closed
Feature
#139
Closed
Enable filtering cells touching borders#138
Feature
#139
Assignees
lguerard
Labels
enhancementNew feature or request
Milestone
2.0.0

Description

@lguerard
lguerard
opened on Mar 18, 2026

python-imcflibs/src/imcflibs/imagej/objects3d.py

Line 74 in 26f64c9

def segment_3d_image(imp, title=None, min_thresh=1, min_vol=None, max_vol=None):
doesn't have an argument to automatically remove cells touching borders, this could be added.

Activity

  1. lguerard
    self-assigned this
    on Mar 18, 2026
  2. lguerard
    added this to IMCF-Fijion Mar 18, 2026
  3. lguerard
    added
    enhancementNew feature or request
    on Mar 18, 2026
  4. lguerard
    added the
    Feature
    issue type on Mar 18, 2026
  5. ehrenfeu
    moved this to Ready in IMCF-Fijion Mar 25, 2026
  6. ehrenfeu
    added this to the 2.0.0 milestone on Mar 25, 2026
  7. ehrenfeu
    linked a pull request that will close this issueAdd options to segment_3d_image for removing objects touching borders #139on Mar 25, 2026
  8. ehrenfeu
    moved this from Ready to In progress in IMCF-Fijion Mar 25, 2026
  9. ehrenfeu
    moved this from In progress to In review in IMCF-Fijion Mar 25, 2026

  10. ehrenfeu commented on Apr 7, 2026

    @ehrenfeu
    ehrenfeu
    on Apr 7, 2026
    Member

    Since #139 got merged this should be complete, correct? Please re-open if not...

  11. ehrenfeu
    closed this as completedon Apr 7, 2026
  12. github-project-automation
    moved this from In review to Done in IMCF-Fijion Apr 7, 2026
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Metadata

Metadata

Assignees

Labels

enhancementNew feature or request

Type

Feature

Projects

Milestone

Relationships

None yet

Development

No branches or pull requests

Issue actions