Issues

• Shapes with string indices cannot be displayed

  scverse/napari-spatialdata#404 · Filter by author pakiessling opened on Sep 23, 2026

• Title: Labels categorical coloring fails for label ids missing from table rows when *_colors is present in adata.uns

  scverse/napari-spatialdata#392 · Filter by author ArneDefauw opened on Apr 10, 2026
  1

• Allow colormap scaling to reflect raw counts instead of hard-coded [0, 1] range

  scverse/napari-spatialdata#387 · Filter by author lijinbio opened on Feb 16, 2026
  4

• Support both r, g, b and R, G, B for displaying images

  scverse/napari-spatialdata#382 · Filter by author LucaMarconato opened on Dec 23, 2025

• KeyError: 'SpatialData'

  scverse/napari-spatialdata#381 · Filter by author smndvgnc opened on Dec 15, 2025
  2

• Installation problem

  scverse/napari-spatialdata#379 · Filter by author aloboa opened on Nov 18, 2025

• Migrate to scverse cookiecutter template

  scverse/napari-spatialdata#378 · Filter by author Zethson opened on Nov 10, 2025
  

• Points subsampling

  scverse/napari-spatialdata#372 · Filter by author grst opened on Aug 26, 2025
  2

• How to visualize specific gene transcripts and specific cell-type cell_boundaries within napari-spatialdata?

  scverse/napari-spatialdata#369 · Filter by author Pancreas-Pratik opened on Jul 7, 2025
  1

• Shift-E on point elements doesn't retain annotations (i.e. additional DataFrame columns)

  scverse/napari-spatialdata#367 · Filter by author m-albert opened on Jun 25, 2025
  3

• add_elements not adding elements using Interactive

  scverse/napari-spatialdata#362 · Filter by author lguerard opened on May 13, 2025

• RuntimeError when trying to run napari-spatialdata

  scverse/napari-spatialdata#361 · Filter by author royassis opened on May 4, 2025

• how to indicate the shape of spatialDATA to subset spatial_adata

  scverse/napari-spatialdata#359 · Filter by author zhuzaicoder opened on Apr 23, 2025

• Multiscale image visualization

  scverse/napari-spatialdata#352 · Filter by author Mr-Milk opened on Apr 1, 2025

• Is it possible to show two different channels of the same image as different layers?

  scverse/napari-spatialdata#351 · Filter by author pakiessling opened on Mar 28, 2025
  2

• Widget to explain Color code of shapes

  scverse/napari-spatialdata#350 · Filter by author pakiessling opened on Mar 28, 2025

• why len(unique) <= len(res) // 100

  scverse/napari-spatialdata#346 · Filter by author z-spider opened on Feb 10, 2025
  1

• about Interactive(sdata)

  scverse/napari-spatialdata#344 · Filter by author szy23333 opened on Jan 21, 2025
  2

• Legend (categorical obs column) for scatterplot widget not consistent

  scverse/napari-spatialdata#339 · Filter by author LucaMarconato opened on Jan 5, 2025
  1

• Teardown problems in scatterplot widget tests still present

  scverse/napari-spatialdata#335 · Filter by author LucaMarconato opened on Dec 17, 2024

• Next steps after the scatterplot PR

  scverse/napari-spatialdata#333 · Filter by author LucaMarconato opened on Dec 17, 2024
  1

• 2.5D visualization

  scverse/napari-spatialdata#330 · Filter by author melonora opened on Nov 8, 2024
  2

• Colors categorical column in table annotated by a labels layer not correct in napari-spatialdata

  scverse/napari-spatialdata#328 · Filter by author ArneDefauw opened on Oct 30, 2024
  4

• Is "polygon_query" function working properly?

  scverse/napari-spatialdata#327 · Filter by author yt723 opened on Oct 23, 2024
  4

• make multicolor images

  scverse/napari-spatialdata#326 · Filter by author mezwick opened on Oct 23, 2024
  6