bioinformatics-tool

🔎 💊 Mass screening of contigs for antimicrobial and virulence genes

Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm

Scissor package

A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0

Integrating GWAS and spatial transcriptomics for spatially resolved mapping of cells associated with human complex traits.

A modular annotation tool for genomic variants

Analyze your RNA sequencing data without writing a single line of code

🚀 seqfu - Sequece Fastx Utilities

iLearnPlus is the first machine-learning platform with both graphical- and web-based user interface that enables the construction of automated machine-learning pipelines for computational analysis and predictions using nucleic acid and protein sequences.

📹 Collection of my Youtube Tutorials over the years! Read, write, and share what you create ✨🎈

🌺 reference-free transcriptome assembly for short and long reads

Protein structure alignment and search algorithm

Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data

Blender plugin to process biological data and molecular work.

An implementation of MNN (Mutual Nearest Neighbors) correct in python.

Genomics data visualization in Python by using matplotlib.

NEAT (NExt-generation Analysis Toolkit) simulates next-gen sequencing reads and can learn simulation parameters from real data.

Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info

FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.

memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping