medline

VerifAI initiative to build open-source easy-to-deploy generative question-answering engine that can reference and verify answers for correctness (using posteriori model)

Analysis of the human symptoms–disease network

MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)

Julia utilities for interacting with biomedical databases and biomedical application programming interfaces (APIs)

Computing term cooccurrence in MEDLINE

Search Workbench is a tool for visually appraising, editing and comparing PubMed searches

Query analysis pipeline framework

Repository of our paper on Self-citation analysis in PubMed data

PubMed/Medline query transpiler

Chart the proportion of MeSH categories is a given PubMed results set

Medline Transpose project

A simple console application that will go through the Medline Pubmed dataset and extract out a given set of fields.

Medical Subject Heading Exploder

Python scripts for searching Pubmed using Biopython and working with eponymous terms

The Corpus Storage System (CoStoSys) is a tool and abstraction layer for a PostgreSQL document database and part of the Jena Document Information System (JeDIS).

A fixed fork of bibutils from sourceforge to process pubmed PMC medline nbib files and convert them into Word Source.xml bibliography file

A VSM-dictionary that uses NCBI's E-utilities API to connect with the PubMed database

A simple Python script for parsing selected data from PubMed-format files and saving it to a .csv file.

Small webservice to grab by-year counts for a PubMed search