🍀 Evolutionary optimization library for Go (genetic algorithm, partical swarm optimization, differential evolution)
⚗ A package useful for chemistry written in Python
circularMT creates pictures of the genomic arrangement of mitochondrial genomes
GAGA is a fast, header only, multi-objective, and distributed evolutionary algorithm library written in modern C++. It is designed to be easily usable with various genotype representations and allows the user to enable or disable several features such as novelty search or speciation. It also produces and exports various customizable statistics.
Chemistry toolkit for simulating the aqueous speciation of metal-oxo clusters
Code used to analyse WGS data of giraffe in Coimbra et al. 2021
A process to better define speciation
Digital evolution model dedicated to bacterial in silico experimental evolution.
A Python package to plot fractional composition diagrams and pH-log c diagrams
An R/C++ package for simulating the evolution of retrotransposons over time.
Neural Evolution of Augmenting Topologies(NEAT) library written in javascript, heavily based on Kenneth O. Stanley's c++ library.
Aqueous chemical equilibrium speciation solver for Excel (VBA macro)
EvoLatent — Simulated Evolution in Latent Space. An open-source Python framework for evolving artificial intelligence rather than designing it. Neuroevolution + novelty search + NEAT-style speciation + open-ended evolution with structural genome mutations.
Scripts accompanying manuscript "The genomic basis of reproductive and migratory behaviour in a polymorphic salmonid"
Agent-based evolutionary ecosystem simulator: thousands of organisms evolving across procedurally generated biomes.
Python tool for the automatic generation of reactive transport libraries in COMSOL Multiphysics from a database DAT file.
Large-scale aqueous speciation modeling
a Python genetic algorithm that reaches a desired outcome through evolution-inspired processes
Simulation of evolutionary branching under optimal resource choice
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