chore(deps): bump the python-dependencies group across 1 directory with 5 updates

[dependabot]

Bumps the python-dependencies group with 5 updates in the / directory:

Package	From	To
numpy	2.5.2	2.5.3
pandas	3.0.5	3.0.6
ruff	0.16.4	0.16.8
ty	0.0.74	0.0.82
pandas-stubs	3.0.5.260730	3.0.5.260914

Updates numpy from 2.5.2 to 2.5.3

Release notes

Sourced from numpy's releases.

v2.5.3 (Sep 6, 2026)

NumPy 2.5.3 Release Notes

The NumPy 2.5.3 is a patch release that fixes bugs discovered after the 2.5.2 release. Apart from the usual bug and maintenance work, there are a number of StringDType related fixes for problems discovered during the ongoing string work in the main branch.

This release supports Python versions 3.12-3.15

Changes

• Casting a fixed-width byte string array (np.bytes_) to StringDType now raises TypeError when the bytes are not valid UTF-8. Previously the invalid bytes were stored as-is and later caused undefined behavior in string operations.

  (gh-32296)

• MaskedArray._fill_value would become stale when ufuncs that change dtype left the result holding a fill_value typed for the old dtype. The mismatch was silent until something later called _check_fill_value, such as .view(), and then a TypeError would be raised. Now, when the copied fill_value is no longer valid for the new dtype, fall back to the default fill_value for that dtype instead of propagating the stale value. This may raise a ComplexWarning if the fill_value is complex and the new dtype is real.

  (gh-32423)

Contributors

A total of 9 people contributed to this release. People with a "+" by their names contributed a patch for the first time.

• Charles Harris
• Iason Krommydas
• James Davies +
• Joren Hammudoglu
• Maanas Arora
• Matti Picus
• Nathan Goldbaum
• Shikhar Goel +
• Yeonho Kim +

Pull requests merged

A total of 27 pull requests were merged for this release.

• #32235: MAINT: Prepare 2.5.x for further development

... (truncated)

Commits

• dd88c0c Merge pull request #32511 from charris/prepare-2.5.3
• edcac6a REL: Prepare for the NumPy 2.5.3 release
• fd4d908 Merge pull request #32509 from charris/backport-32496
• 65bb1da BUG: fix crash in ufunc.resolve_dtypes with a Python scalar type (#32496)
• 294956e Merge pull request #32506 from charris/backport-32503
• 26428d9 DOC: fix scipy docs links in intersphinx mapping (#32507)
• 5fab1cb DOC: use static scipy doc site for intershpinx (#32503)
• 7beed2f Merge pull request #32481 from ngoldbaum/stringdtype-backport
• 8972f70 Merge pull request #32478 from charris/backport-32466
• ab1b589 Merge pull request #32477 from charris/backport-32423
• Additional commits viewable in compare view

Updates pandas from 3.0.5 to 3.0.6

Release notes

Sourced from pandas's releases.

pandas 3.0.6

We are pleased to announce the release of pandas 3.0.6. This is a patch release in the 3.0.x series and includes some regression fixes and bug fixes. We recommend that all users of the 3.0.x series upgrade to this version. This is also the first release to support Python 3.15.

See the full whatsnew for a list of all the changes.

Pandas 3.0 supports Python 3.11 and higher. The release can be installed from PyPI:

python -m pip install --upgrade pandas==3.0.*

Or from conda-forge

conda install -c conda-forge pandas=3.0

Please report any issues with the release on the pandas issue tracker.

Thanks to all the contributors who made this release possible.

Commits

• 2905718 RLS: 3.0.6
• 3188ced [backport 3.0.x] BUG: read_csv(sep=None) raised TypeError instead of falling...
• f097905 DOC: cleanup 3.0.6 whatsnew + mention Python 3.15 support (#68965) (#68969)
• 4f68223 [backport 3.0.x] BUG: fix setting with bool column mask into 1-column DataFra...
• e3df0e8 [backport 3.0.x] BUG: full-slice setitem into a pyarrow-backed array shared m...
• b7735f6 Backport PR #66117 on branch 3.0.x (BUG: interpolate leaving NAs unfilled for...
• bca0b77 [backport 3.0.x] BUG: read_csv leaked the string-intern table when a column f...
• bca1e5d [backport 3.0.x] BUG: prevent external mutation of RangeIndex._data (CoW) (#6...
• c95b42c [3.0.x] CI: skip cython-lint on pre-commit.ci (#68910)
• 9cbd884 [backport 3.0.x] Backport of some already merged regression fixes (#68447)
• Additional commits viewable in compare view

Updates ruff from 0.16.4 to 0.16.8

Release notes

Sourced from ruff's releases.

0.16.8

Release Notes

Released on 2026-09-16.

Bug fixes

• Visit functional TypedDict keyword arguments correctly (#28584)
• [flake8-simplify] Detect nested async with under sync parent (SIM117) (#27821)
• [flake8-simplify] Preserve operand order in SIM109 fix (#27824)
• [pyupgrade] Preserve required parentheses in multiline UP040 fixes (#28164)
• [pyupgrade] Skip TypeVarTuple and ParamSpec conversions with bounds or constraints (UP040, UP046, UP047) (#28505)

Rule changes

• Add support for __lazy_modules__ (#28459)
• Recognize PEP-728 TypedDict class keywords (#28533)
• Recognize quoted types in typing.TypeForm (#28507)
• Support conditional assignment to __lazy_modules__ (#28491)
• [flake8-type-checking] Prefer lazy imports over TYPE_CHECKING on Python 3.15 and later (TC001, TC002, TC003) (#28541)
• [pyupgrade] Make the fix for UP040 always unsafe (#28526)
• [pyupgrade] Stop recommending deprecated ByteString aliases (UP035) (#28498)
• [ruff, flake8-use-pathlib] Recognize the parent_mode argument (RUF064, PTH103) (#28528)
• [ruff] Detect \Z in pytest.raises() match patterns (RUF043) (#28598)

CLI

• Use rule name and code in formatter incompatibility warnings (#28571)

Configuration

• [flake8-tidy-imports] Add extend-banned-api (#28644)

Contributors

• @​VedantMadane
• @​alzeph
• @​charliermarsh
• @​fredrikblau
• @​ntBre
• @​zsol
• @​Aniket-a14
• @​r-b-1

Install ruff 0.16.8

Install prebuilt binaries via shell script

curl --proto '=https' --tlsv1.2 -LsSf https://releases.astral.sh/github/ruff/releases/download/0.16.8/ruff-installer.sh | sh
</tr></table> 

... (truncated)

Changelog

Sourced from ruff's changelog.

0.16.8

Released on 2026-09-16.

Bug fixes

• Visit functional TypedDict keyword arguments correctly (#28584)
• [flake8-simplify] Detect nested async with under sync parent (SIM117) (#27821)
• [flake8-simplify] Preserve operand order in SIM109 fix (#27824)
• [pyupgrade] Preserve required parentheses in multiline UP040 fixes (#28164)
• [pyupgrade] Skip TypeVarTuple and ParamSpec conversions with bounds or constraints (UP040, UP046, UP047) (#28505)

Rule changes

• Add support for __lazy_modules__ (#28459)
• Recognize PEP-728 TypedDict class keywords (#28533)
• Recognize quoted types in typing.TypeForm (#28507)
• Support conditional assignment to __lazy_modules__ (#28491)
• [flake8-type-checking] Prefer lazy imports over TYPE_CHECKING on Python 3.15 and later (TC001, TC002, TC003) (#28541)
• [pyupgrade] Make the fix for UP040 always unsafe (#28526)
• [pyupgrade] Stop recommending deprecated ByteString aliases (UP035) (#28498)
• [ruff, flake8-use-pathlib] Recognize the parent_mode argument (RUF064, PTH103) (#28528)
• [ruff] Detect \Z in pytest.raises() match patterns (RUF043) (#28598)

CLI

• Use rule name and code in formatter incompatibility warnings (#28571)

Configuration

• [flake8-tidy-imports] Add extend-banned-api (#28644)

Contributors

• @​VedantMadane
• @​alzeph
• @​charliermarsh
• @​fredrikblau
• @​ntBre
• @​zsol
• @​Aniket-a14
• @​r-b-1

0.16.7

Released on 2026-09-10.

Preview features

• [ruff] Add rule for default values on method receivers (RUF077) (#26700)

... (truncated)

Commits

• 62914c4 Bump version to 0.16.8 (#28648)
• c47e0cd [ty] Bound aliased intersection expansion during inference (#28546)
• ff4747b renovate: update uv hashes correctly with setup-uv (#28621)
• 94efeaa [ty] Compact reachable binding and declaration histories (#28349)
• 50020fb [ty] Avoid storing constraint nodes twice (#28375)
• 446bb68 [ty] Compare bound-method receivers before signatures (#28384)
• 304ab86 [flake8-type-checking] Prefer lazy imports over TYPE_CHECKING on 3.15+ (`...
• d940b24 [ty] Watch script dependencies in CLI watch mode (#28125)
• fe9f065 [flake8-tidy-imports] Add extend-banned-api (#28644)
• 31131db [ty] Support type[A & B] (#27124)
• Additional commits viewable in compare view

Updates ty from 0.0.74 to 0.0.82

Release notes

Sourced from ty's releases.

0.0.82

Release Notes

Released on 2026-09-17.

Preview features

• Ignore Python version from uv metadata (#28646)
• Watch script dependencies in CLI watch mode (#28125)

CLI

• Only skip uv workspace metadata for a single script (#28581)
• Support dependency lints with --config-file (#28573)

LSP server

• Filter string literal completions by typed text (#28612)
• Find member references across files (#28669)
• Find parameter references across files (#28670)
• Preserve valid LSP settings when configuration resolution fails (#28653)
• Reuse identifier matcher in LSP operations (#28663)
• Watch script dependencies in the language server (#28522)

Diagnostic improvements

• Add an autofix for unused awaitables (#28668)
• Add annotations for unreachable code caused by boolean operands (#28521)
• Add subdiagnostics to redundant-condition rules warning about reachability implications (#28263)
• Clarify diagnostics for unimplemented abstract members (#28538)
• Extend unreachable-code annotations to while, assert, and match statements (#28290)

Core type checking

• Allow experimental intersection syntax in PEP 695 aliases (#28513)
• Bound aliased intersection expansion during inference (#28546)
• Check declared variance against final method bindings (#28155)
• Fix recursive protocol checks for decorated methods (#28293)
• Freshen constructor-owned Self with class type variables (#28592)
• Improve disjointness of functools.partial types (#28660)
• Include constraint-set assignability in more checks (#28642)
• Infer conditional literals from peers in unspecialized contexts (#28633)
• Infer generic elements from gradual tuples (#28637)
• Introduce Recursive types and fully support recursive implicit type aliases (#28425)
• Narrow type context during tuple inference (#28658)
• Preserve field metadata after overload resolution (#28635)
• Preserve gradual class assignability in constraint-set checks (#28638)
• Preserve gradual tuple lengths during callable inference (#28588)
• Preserve tuple shapes during concatenation (#28617)
• Reject abstract class instantiation (#28167)

... (truncated)

Changelog

Sourced from ty's changelog.

0.0.82

Released on 2026-09-17.

Preview features

• Ignore Python version from uv metadata (#28646)
• Watch script dependencies in CLI watch mode (#28125)

CLI

• Only skip uv workspace metadata for a single script (#28581)
• Support dependency lints with --config-file (#28573)

LSP server

• Filter string literal completions by typed text (#28612)
• Find member references across files (#28669)
• Find parameter references across files (#28670)
• Preserve valid LSP settings when configuration resolution fails (#28653)
• Reuse identifier matcher in LSP operations (#28663)
• Watch script dependencies in the language server (#28522)

Diagnostic improvements

• Add an autofix for unused awaitables (#28668)
• Add annotations for unreachable code caused by boolean operands (#28521)
• Add subdiagnostics to redundant-condition rules warning about reachability implications (#28263)
• Clarify diagnostics for unimplemented abstract members (#28538)
• Extend unreachable-code annotations to while, assert, and match statements (#28290)

Core type checking

• Allow experimental intersection syntax in PEP 695 aliases (#28513)
• Bound aliased intersection expansion during inference (#28546)
• Check declared variance against final method bindings (#28155)
• Fix recursive protocol checks for decorated methods (#28293)
• Freshen constructor-owned Self with class type variables (#28592)
• Improve disjointness of functools.partial types (#28660)
• Include constraint-set assignability in more checks (#28642)
• Infer conditional literals from peers in unspecialized contexts (#28633)
• Infer generic elements from gradual tuples (#28637)
• Introduce Recursive types and fully support recursive implicit type aliases (#28425)
• Narrow type context during tuple inference (#28658)
• Preserve field metadata after overload resolution (#28635)
• Preserve gradual class assignability in constraint-set checks (#28638)
• Preserve gradual tuple lengths during callable inference (#28588)
• Preserve tuple shapes during concatenation (#28617)
• Reject abstract class instantiation (#28167)
• Respect frozen=False overrides on Pydantic subclasses (#28515)

... (truncated)

Commits

• 6999edb Bump version to 0.0.82 (#4547)
• 69ee79c Update prek dependencies (#4534)
• 9bbaccc Remove accidental uv version constraint (#4537)
• edb7fab Update astral-sh/setup-uv action to v10.1.0 (#4535)
• bc531b1 Update dependency prek to v0.4.14 (#4533)
• 66d7e3f renovate: track uv versions/checksums with setup-uv (#4532)
• 4edd772 Bump version to 0.0.81 (#4528)
• 8cfdd79 Use paid GitHub-hosted runners for Linux (#4502)
• 7fd8e15 Bump version to 0.0.80 (#4501)
• c163f21 Update dependency prek to v0.4.12 (#4494)
• Additional commits viewable in compare view

Updates pandas-stubs from 3.0.5.260730 to 3.0.5.260914

Commits

• 6ad02be Version 3.0.5.260914
• 5533758 Bump pyrefly version (#1945)
• 711cf2f BLD: temporarily pin pyright to 1.1.411 (#1942)
• 507243e TST: nightly expect Pandas4Warning for Series.drop/rename inplace and...
• a09e2ed TYP: align Index subtraction overloads (#1938)
• 156be75 TST: add focused Period scalar subtraction tests (#1936)
• 6b84c3a CLN: load tests._typing from pandas-stubs/_typing.pyi without file swap (#1930)
• 14f8185 TST: add focused Period scalar addition tests (#1933)
• 0a77a3a TYP: move stub-only helper types to _stubs_only (#1935)
• a382437 TYP: update stubs for ty 0.0.76 (#1932)
• Additional commits viewable in compare view

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