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Monitor modernization + few cleanups and fixes - #131

Merged

ShantanuKodgirwar merged 31 commits into

mainfrom

monitor-modernization

Oct 9, 2026

Merged

Monitor modernization + few cleanups and fixes#131
ShantanuKodgirwar merged 31 commits into
mainfrom
monitor-modernization

Commits on Oct 9, 2026
- dummy monitor doesn't crash anymore + optional napari monitor should work but untested; minor mismatch of name "probe_estimate" + adds a small test for this
  ShantanuKodgirwar
  committed
  ee7b55b
- minor correction with super() call
  ShantanuKodgirwar
  committed
  9bafacb
- class for the image refresh logic
  ShantanuKodgirwar
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  7523987
- minor fix
  ShantanuKodgirwar
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  068f6e7
- holds reference to the live object and probe along with other parameters
  ShantanuKodgirwar
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  866c35b
- abstract monitor calls the existing methods and the subclasses methods continue working
  ShantanuKodgirwar
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  9ebd106
- some duplicated code is simplified + other changes that uses monitor frame
  ShantanuKodgirwar
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  452a048
- adds parameter history plot to trace parameters that have changed
  ShantanuKodgirwar
  committed
  dd0c0e0
- removing beam width and overlap from tracked values
  ShantanuKodgirwar
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  accbce2
- reconstruction.saveResults now takes the optional argument snapshot=monitor to store some png results with your datasets wraps around monitor.saveFigures
  ShantanuKodgirwar
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  cb69ee0
- adds angle correction for monitoring
  ShantanuKodgirwar
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  cd28147
- minor updates
  ShantanuKodgirwar
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  ee55869
- logs some messages only once while running
  ShantanuKodgirwar
  committed
  5ea348b
- using tqdm trange to make sure the progress bar appears only once: affects all engines.
  ShantanuKodgirwar
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  8ba3182
- ignore some files
  ShantanuKodgirwar
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  afb7faf
- black formatter
  ShantanuKodgirwar
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  e021dbd
- fpm sampling test updated
  ShantanuKodgirwar
  committed
  0562a6b
- adds test for monitor frame
  ShantanuKodgirwar
  committed
  1bbfcd3
- tests the new parameter history plotting
  ShantanuKodgirwar
  committed
  1cb9196
- minor change to the sim to show that we can now store snapshot with the hdf5 file
  ShantanuKodgirwar
  committed
  c51234e
- some summary message after run
  ShantanuKodgirwar
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  e534ba3
- stores message afterwards
  ShantanuKodgirwar
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  7503ff5
- example monitor GUI to explore different reconstruction options
  ShantanuKodgirwar
  committed
  c20968d
- ePIE had a commented out reconstruction
  ShantanuKodgirwar
  committed
  6fc748c
- FPM didn't close filenames
  ShantanuKodgirwar
  committed
  c6dfa32
- removing legacy dead code + docstring is updated
  ShantanuKodgirwar
  committed
  0736299
- minor reformatting
  ShantanuKodgirwar
  committed
  39f9f15
- updates docstrings
  ShantanuKodgirwar
  committed
  b4cf966
- some unused import cleanup and other things
  ShantanuKodgirwar
  committed
  81c0765
- adding some type hints
  ShantanuKodgirwar
  committed
  d18e35d
- updates to some tests
  ShantanuKodgirwar
  committed
  81cccc2

Commits

Commits on Oct 9, 2026